WebYou should be using maker2eval_gtf. The scripts you mention were actually deprecated in MAKER 2.10 onwards (about 5 years ago). You may be looking at old documentation. WebBoth Cufflinks and cufflinks2gff3 are available as tools in the iPlant Discovery Environment (DE). Other auxiliary scripts now available in the DE include tophat2gff3, maker2jbrowse, …

maker: Update to maker-3.01.04.

WebCufflinks. The main website for cufflinks is here. NOTE: If you're looking for old releases of Cufflinks, including source, you can find them here.. Cufflinks assembles transcripts, … http://cole-trapnell-lab.github.io/cufflinks/file_formats/ dunn edwards ash gray accent colors

How to Put On Cufflinks: 12 Steps (with Pictures) - wikiHow

WebThe script tophat2gff3 and cufflinks2gff3 were then used to process the results into GFF3 format. The resulting GFF3 files were provided to the est_gff option in MAKER2. MAKER2 was run on L. humile using the published genome project EST dataset together with all Apocrita and Formicidae ESTs available from dbEST. The protein homology dataset ... WebMay 22, 2013 · Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc WebMar 1, 2003 · This will generate three files: maker_opts.ctl (required to be modified). maker_exe.ctl (do not need to modify this file). maker_bopts.ctl (optionally modify this file). maker_opts.ctl: - If not using RepeatMasker, modify model_org=all to model_org= - If not using RepeatMasker, modify model_org=all to an appropriate family/genus/species.. … dunne county ok